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Publications

2020

  • Battocchio, G., González, R., Rao, A., Schapiro, I, and Mroginski, M.A. (2020) Dynamic Properties of the Photosensory Domain of Deinococcus Radiodurans Bacteriophytochrome. J Phys Chem B, 124, 1740-1750. doi: 10.1021/acs.jpcb.0c00612.

  • Bertalan, É., Lešnik, S., Bren, U., and Bondar, A.-N. (2020). Protein-water hydrogen-bond networks of G protein-coupled receptors: Graph-based analyses of static structures and molecular dynamics. J Struct Biol, 212, 107634. doi: 10.1016/j.jsb.2020.107634.

  • Broser, M., Spreen, A., Konold, P.E., Peter, E., Adam, S., Borin, V., Schapiro, I., Seifert, R., Kennis, J.T., Sierra, Y.A.B., and Hegemann, P. (2020). NeoR, a near-infrared absorbing rhodopsin. Nat Commun 11, 5682. doi: 10.1038/s41467-020-19375-8.

  • Buhrke. D., Battocchio, G., Wilkening, S., Blain-Hartung, M., Baumann, T., Schmitt, F. J., Friedrich, F., Mroginski, M. A., and Hildebrandt, P. (2020) Red, orange, green: Light- and Temperature-dependent Color Tuning in a Cyanobacteriochrome. Biochemistry 59, 4, 509-519, doi: 10.1021/acs.biochem.9b00931.

  • Buhrke, D., Gourinchas, G., Müller, M., Michael, N., Hildebrandt, P., and Winkler, A. (2020). Distinct chromophore-protein environments enable asymmetric activation of a bacteriophytochrome activated diguanylate cyclase. J Biol Chem 295, 539-551. doi: 10.1074/jbc.RA119.011915.

  • Buhrke, D., and Hildebrandt, P. (2020). Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem Rev 120, 3577-3630. doi: 10.1021/acs.chemrev.9b00429.

  • Chernev, P., Fischer, S., Hoffmann, J., Oliver, N., Assunção, R., Yu, B., Burnap, R., Zaharieva, I., Nürnberg, D., Haumann, M., and Dau, H. (2020). Light-driven formation of manganese oxide by today's photosystem II supports evolutionarily ancient manganese-oxidizing photosynthesis. Nat commun 11, 6110. doi: 10.1038/s41467-020-19852-0.

  • Friedrich, D., Brünig, F.N., Nieuwkoop, A.J., Netz, R., Hegemann, P. and Oschkinat, H. (2020). Collective exchange processes reveal an active site proton cage in bacteriorhodopsin. Commun Biol, 3, 1-9. doi: 10.1038/s42003-019-0733-7.

  • Friedrich, D., Perodeau, J., Nieuwkoop, A.J., and Oschkinat, H. (2020). MAS NMR detection of hydrogen bonds for protein secondary structure characterization. J Biomol NMR 74, 247-256. doi: 10.1007/s10858-020-00307-z.

  • Gerland, L.M., Friedrich, D., Hopf, L., Donovan, E., Wallmann, A., Erdmann, N., Diehl, A., Bommer, M., Buzar, K., Ibrahim, M., Schmieder, P., Dobbek, H., Zouni, A., Bondar, A.-N., Dau, H., and Oschkinat, H. (2020). pH‐Dependent Protonation of Surface Carboxylates in PsbO Enables Local Buffering and Triggers Structural Changes. Chem Bio Chem 21, 1597-1604. doi: 10.1002/cbic.201900739.

  • Golub, M., Hussein, R., Ibrahim, M., Hecht, M., Wieland, D.C.F., Martel, A., Machado, B., Zouni, A., and Pieper, J. (2020). Solution Structure of the Detergent–Photosystem II Core Complex Investigated by Small-Angle Scattering Techniques. J Phys Chem B, 124, 8583-8592. doi: 10.1021/acs.jpcb.0c07169.
  • Harris, A., Lazaratos, M., Siemers, M., Watt, E., Hoang, A., Tomida, S., Schubert, L., Saita, M., Heberle, J., Furutani, Y., Kandori, H., Bondar, A.-N., and Brown, L. S. (2020). Mechanism of Inward Proton Transport in an Antarctic Microbial Rhodopsin. J Phys Chem B 124, 4851-4872. doi: 10.1021/acs.jpcb.0c02767.

  • Hontani, Y., Broser, M., Luck, M., Weißenborn, J., Kloz, M., Hegemann, P., and Kennis, J.T. (2020). Dual photoisomerization on distinct potential energy surfaces in a UV-absorbing rhodopsin. J Am Chem Soc, 142, 11464-11473. doi: 10.1021/jacs.0c03229.
  • Hugentobler, K., Heinrich, D., Berg, J., Heberle, J., Brzezinski, P., Schlesinger, R., and Block, S. (2020). Lipid Composition Affects the Efficiency in the Functional Reconstitution of the Cytochrome c Oxidase. Int J Mol Sci, 21, 6981. doi: 10.3390/ijms21196981.

  • Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M. H., Hussein, R., Lassalle, L., Sutherlin, K. D., Young, I. D., Fuller, F. D., Gul, S., Kim, I.-S., Simon, P. S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C. C., Orville, A. M., Saichek, N., Northen, T., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovsky, R., Mendez, D., Moriarty, N. W., Holton, J. M., Dobbek, H., Brewster, A. S., Adams, P. D., Sauter, N. K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V. K., and Yano, J. (2020). Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism. PNAS 117, 12624-12635. doi: 10.1073/pnas.2000529117.

  • Kaufmann, J.C.D., Krause B.S., Adam S., Ritter E., Schapiro I., Hegemann P. and Bartl F.J. (2020). Modulation of Light Energy Transfer from Chromophore to Protein in the Channelrhodopsin ReaChR. Biophys J 119, 705-716. doi: 10.1016/j.bpj.2020.06.031.

  • Kraskow, A., Nguyen, D. A., Buhrke, D., Velasquez Escobar, F., Fernandez Lopez, M., Michael, N., Sauthof, L., Schmidt, A., Piwowarski, P., Yang, Y., Stensitzki, T., Adam, S., Bartl, F., Schapiro, I., Heyne, K., Siebert, F., Scheerer, P., Mroginski, M. A., and Hildebrandt, P. (2020). Intramolecular Proton Transfer Controls Protein Structural Changes in Phytochrome. Biochemistry 59, 1023-1037. doi: 10.1021/acs.biochem.0c00053.

  • Kruse, F., Nguyen, A.D., Dragelj, J., Schlesinger, R., Heberle, J., Mroginski, M.A. and Weidinger, I.M. (2020). Characterisation of the Cyanate Inhibited State of Cytochrome c Oxidase. Sci Rep 10, 3863. doi: 10.1038/s41598-020-60801-0.

  • Lazaratos, M., Karathanou, K., and Bondar, A.-N. (2020). Graphs of dynamic H-bond networks: from model proteins to protein complexes in cell signaling. Curr Opin Struct Biol 64, 79-87. doi: 10.1016/j.sbi.2020.06.006.

  • Müh, F., and Zouni, A. (2020). Structural basis of the light-harvesting in the photosystem II core complex. Protein Sci 29,1090-1119. doi: 10.1002/pro.3841.

  • Nagano, S., Guan, K., Shenkutie, S., Feiler, C., Weiss, M. S., Kraskov, A., Buhrke, D., Hildebrandt, P., and Hughes, J. (2020). Structural insights into photoactivation and signalling in plant phytochromes. Nat Plants 6, 581-588. doi: 10.1038/s41477-020-0638-y.

  • Reidelbach, M. and Imhof, P. (2020). Proton transfer in the D-channel of cytochrome c oxidase modelled by a transition network approach. Biochim Biophys Acta. doi: 10.1016/j.bbagen.2020.129614.

  • Sadeghi, M., Balke, J., Schneider, C., Nagano, S., Stellmacher, J., Lochnit, G., Lang, C., Weise, C., Hughes, J., and Alexiev, U. (2020). Transient deprotonation of the chromophore affects protein dynamics proximal and distal to the linear tetrapyrrole chromophore in phytochrome Cph1. Biochemistry 59,1051-1062. doi: 10.1021/acs.biochem.9b00967.

  • Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R. K., Johnson, P. J. M., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Arrell, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Brünle, S., Deupi, X., Schertler, G. F. X., Benoit, R. M., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., and Standfuss, J. (2020). Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature 583, 314-318. doi: 10.1038/s41586-020-2307-8.

  • Stensitzki, T., Adam, S., Schlesinger, R., Schapiro, I., and Heyne, K. (2020). Ultrafast Backbone Protonation in Channelrhodopsin-1 Captured by Polarization Resolved Fs Vis-pump-IR-Probe Spectroscopy and Computational Methods Molecules 25, 848. doi: 10.3390/molecules25040848.

  • Velazquez Escobar, F., Kneip, C., Michael, N., Hildebrandt, T., Tavraz, N., Gärtner, W., Hughes, J., Friedrich, T., Scheerer, P., Mroginski, M.A., and Hildebrandt, P. (2020). The Lumi-R Intermediates of Prototypical Phytochromes. J Phys Chem B 124, 4044-4055. doi: 10.1021/acs.jpcb.0c01059.

  • Wolf, A., Dragelj, J., Wonneberg, J., Stellmacher, J., Balke, J., Woelke, A.L., Hodoscek, M., Knapp, E.W., and Alexiev, U. (2020). The redox-coupled proton-channel opening in cytochrome c oxidase. Chem Science 11, 3804-3811. doi: 10.1039/C9SC06463J.

  • Xu, X., Port, A., Wiebeler, Ch., Kai-Hong Zhao, K.-H., Schapiro, I., and Gärtner, W. (2020). Structural elements regulating the photochromicity in a cyanobacteriochrome. PNAS, 117, 2432-2440. doi: 10.1073/pnas.1910208117.