2023

Balke, J., Diaz Gutierrez, P., Rafaluk-Mohr, T., Proksch, J., Koksch, B. and Alexiev, U. (2023). Osmolytes Modulate Photoactivation of Phytochrome: Probing Protein Hydration. Molecules, 28, 16: doi: 10.3390/molecules28166121.

Baserga, F., Storm, J., Schlesinger, R., Heberle, J. and Stripp, S.T. (2023). The catalytic reaction of cytochrome c oxidase probed by in situ gas titrations and FTIR difference spectroscopy. Biochim Biophys Acta, 1864, 4: 149000. doi: 10.1016/j.bbabio.2023.149000.

Bhowmick, A., Hussein, R., Bogacz, I., Simon, P.S., Ibrahim, M., Chatterjee, R., Doyle, M.D., Cheah, M.H., Fransson, T., Chernev, P., Kim, I.-S., Makita, H., Dasgupta, M., Kaminsky, C.J., Zhang, M., Gätcke, J., Haupt, S., Nangca, I.I., Keable, S.M., Aydin, A.O., Tono, K., Owada, S., Gee, L.B., Fuller, F.D., Batyuk, A., Alonso-Mori, R., Holton, J.M., Paley, D.W., Moriarty, N.W., Mamedov, F., Adams, P.D., Brewster, A.S., Dobbek, H., Sauter, N.K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yano, J. and Yachandra, V.K. (2023). Structural evidence for intermediates during O₂ formation in photosystem II. Nature. doi: 10.1038/s41586-023-06038-z.

Bhowmick, A., Simon, P. S., Bogacz, I., Hussein, R., Zhang, M., Makita, H., Ibrahim, M., Chatterjee, R., Doyle, M. D., Cheah, M. H., Chernev, P., Fuller, F. D., Fransson, T., Alonso-Mori, R., Brewster, A. S., Sauter, N. K., Bergmann, U., Dobbek, H., Zouni, A., Messinger, J., Kern, J., Yachandra, V. K. and Yano, J. (2023). Going around the Kok cycle of the water oxidation reaction with femtosecond X-ray crystallography. IUCrJ, 10: 642-655. doi: 10.1107/S205225252300892.

Broser, M., Andruniow, T., Kraskov, A., Palombo, R., Katz, S., Kloz, M., Dostál, J., Bernardo, C., Kennis, J., Hegemann, P., Olivucci M., Hildebrandt, P. (2023). Experimental assessment of the electronic and geometrical structure of a near-infrared absorbing and highly fluorescent microbial rhodopsin. J Phys Chem Lett. doi: 10.1021/acs.jpclett.3c02167.

Bühl, E., Resler, T., Lam, R., Asido, M., Bamberg, E., Schlesinger, R., Bamann, C., Heberle, J. and Wachtveitl, J. (2023). Assessing the Role of R120 in the Gating of CrChR2 by Time-Resolved Spectroscopy from Femtoseconds to Seconds. J Am Chem Soc 145, 40: 21832-21840. doi: 10.1021/jacs.3c05399.

Dau, H. and Greife, P. (2023). Applicability of Transition State Theory to the (Proton-Coupled) Electron Transfer in Photosynthetic Water Oxidation with Emphasis on the Entropy of Activation. Inorganics, 11, 10. doi: 10.3390/inorganics11100389.

Durumeric, A.E.P., Charron, N.E., Templeton, C., Musil, F., Bonneau, K., Pasos-Trejo, A.S., Chen, Y., Kelkar, A., Noé, F. and Clementi, C. (2023). Machine learned coarse-grained protein force-fields: Are we there yet? Curr Opin Struct Biol, 79, 102533. doi: 10.1016/j.sbi.2023.102533.

Elkurdi, A., Guigas, G., Hourani-Alsharafat, L., Scheerer, P., Nienhaus, G. U., Krauß, N., and Lamparter, T. (2023). Time-resolved fluorescence anisotropy with Atto 488-labeled phytochrome Agp1 from Agrobacterium fabrum. Photochem Photobiol. doi: 10.1111/php.13851.

Fricke, S., Harnau, M., Hetsch, F., Liu, H., Leonhard, J., Eylmann, A., Knauff, P., Sun, H., Semtner, M. and Meier, J.C. (2023). Cesium activates the neurotransmitter receptor for glycine. Front Mol Neurosci, 16, 1018530. doi: 10.3389/fnmol.2023.1018530.

González-Viegas, M., Kar, R.K., Miller, A.F. and Mroginski, M.A. (2023). Noncovalent interactions that tune the reactivities of the flavins in bifurcating electron transferring flavoprotein. J Biol Chem, 299, 6: 104762. doi: 10.1016/j.jbc.2023.104762.

Greife, P., Schönborn, M., Capone, M., Assunção, R., Narzi, D., Guidoni, L. and Dau, H. (2023). The electron–proton bottleneck of photosynthetic oxygen evolution. Nature. doi: 10.1038/s41586-023-06008-5.

Hildebrandt, P. (2023). Vibrational spectroscopy of phytochromes. Biomolecules 13: 1007. doi: 10.3390/biom13061007.

Hussein, R., Ibrahim, M., Bhowmick, A., Simon, P.S., Bogacz, I., Doyle, M.D., Dobbek, H., Zouni, A., Messinger, J., Yachandra, V.K., Kern, J.F. and Yano, J. (2023). Evolutionary diversity of proton and water channels on the oxidizing side of photosystem II and their relevance to function. Photosynth Res. doi: 10.1007/s11120-023-01018-w.

Kaeser, G., Krauss, N., Roughan, C., Sauthof, L., Scheerer, P. and Lamparter, T. (2023). Phytochrome-Interacting Proteins. Biomolecules, 14, 1: doi: 10.3390/biom14010009

Kozuch, J., Ataka, K. and Heberle, J. (2023). Surface-enhanced infrared absorption spectroscopy. Nat Rev Methods Primers, 3, 1: 70. doi: 10.1038/s43586-023-00253-8.

Majewski, M., Pérez, A., Thölke, P., Doerr, S., Charron, N.E., Giorgino, T., Husic, B.E., Clementi, C., Noé, F. and De Fabritiis, G. (2023). Machine learning coarse-grained potentials of protein thermodynamics. Nat Commun, 14, 1: 5739. doi: 10.1038/s41467-023-41343-1.

Mohr, S., Aldakul, Y. K., Sun, H., Sawczyc, H., and Lange, A. (2023). Mechanistic Studies of Membrane Proteins Using Integrated Solid-state NMR and Computational Approaches. In: Integrated Structural Biology, ed. T. Polenova, C. M. Quinn, and A. M. Gronenborn, Royal Society of Chemistry, vol. 30, ch. 9: pp. 268-300. doi: 10.1039/bk9781837670154-00268.

Morlock, S., Subramanian, S.K., Zouni, A. and Lisdat, F. (2023). Closing the green gap of photosystem I with synthetic fluorophores for enhanced photocurrent generation in photobiocathodes. Chem Sci. doi: 10.1039/D2SC05324A.

Paschke, R.R., Mohr, S., Lange, S., Lange, A. and Kozuch, J. (2023). In Situ Spectroscopic Detection of Large-Scale Reorientations of Transmembrane Helices During Influenza A M2 Channel Opening. Angew Chem Int Ed Engl, 62, 47: e202309069. doi: 10.1002/anie.202309069.

Saliminasab, M., Yamazaki, Y., Palmateer, A., Harris, A., Schubert, L., Langner, P., Heberle, J., Bondar, A.-N. and Brown, L.S. (2023). A Proteorhodopsin-Related Photosensor Expands the Repertoire of Structural Motifs Employed by Sensory Rhodopsins. J Phys Chem B, 127, 37: 7872-7886. doi: 10.1021/acs.jpcb.3c04032.

Schmidt, A., Kalms, J., Lorent, C., Katz, S., Frielingsdorf, S., Evans, R.M., Fritsch, J., Siebert, E., Teutloff, C., Armstrong, F.A., Zebger, I., Lenz, O. and Scheerer, P. (2023). Stepwise conversion of the Cys₆[4Fe-3S] to a Cys₄[4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase. Chem Sci, 14, 40: 11105-11120. doi: 10.1039/d3sc03739h.

Schubert, L., Chen, J.-L., Fritz, T., Marxer, F., Langner, P., Hoffmann, K., Gamiz-Hernandez, A.P., Kaila, V.R.I., Schlesinger, R. and Heberle, J. (2023). Proton Release Reactions in the Inward H+ Pump NsXeR. J Phys Chem B. doi: 10.1021/acs.jpcb.3c04100.

Simon, P.S., Makita, H., Bogacz, I., Fuller, F., Bhowmick, A., Hussein, R., Ibrahim, M., Zhang, M., Chatterjee, R., Cheah, M.H., Chernev, P., Doyle, M.D., Brewster, A.S., Alonso-Mori, R., Sauter, N.K., Bergmann, U., Dobbek, H., Zouni, A., Messinger, J., Kern, J., Yachandra, V.K. and Yano, J. (2023). Capturing the sequence of events during the water oxidation reaction in photosynthesis using XFELs. FEBS letters, 597, 1: 30-37. doi: 10.1002/1873-3468.14527.

Smirnova, J., Loerke, J., Kleinau, G., Schmidt, A., Burger, J., Meyer, E.H., Mielke, T., Scheerer, P., Bock, R., Spahn, C.M.T. and Zoschke, R. (2023). Structure of the actively translating plant 80S ribosome at 2.2 A resolution. Nat Plants, 9, 6: 987-1000. doi: 10.1038/s41477-023-01407-y

von Freiherr Sass, G.J., Blain-Hartung, M., Baumann, T., Forest, K., Hildebrandt, P., Budisa, N. (2023). The repurposing of archaeal tyrosyl-tRNA synthetase in orthogonal translation with 5-cyanotryptophan as an infrared probe for local structural information, electrostatics, and hydrogen bonding. Prot Sci 32: e4705. doi: 10.1002/pro.4705.

Walter, M., Schubert, L., Heberle, J., Schlesinger, R., Losi, A. (2023). Time-resolved photoacoustics of channelrhodopsins: early energetics and light-driven volume changes. Photochem Photobiol Sci. doi: 10.1007/s43630-022-00327-8.

Wolf, A., Volz-Rakebrand, P., Balke, J. and Alexiev, U. (2023). Diffusion Analysis of NAnoscopic Ensembles: A Tracking-Free Diffusivity Analysis for NAnoscopic Ensembles in Biological Samples and Nanotechnology. Small, 19, 16: e2206722. doi: 10.1002/smll.202206722

Yang, Y., Stensitzki, T.,  Lang, C., Hughes, J., Mroginski, M. A., and Heyne, K. (2023). Ultrafast Protein Response in the Pfr State of Cph1 Phytochrome. Photochem Photobiol Sci 22:  919–930. doi: 10.1007/s43630-023-00362-z.

Zaporozhets, I. and Clementi, C. (2023). Multibody Terms in Protein Coarse-Grained Models: A Top-Down Perspective. J Phys Chem B. doi: 10.1021/acs.jpcb.3c04493.