Publications

2019

  • Assunção, R., Zaharieva, I., and Dau, H. (2019). Ammonia as a substrate-water analogue in photosynthetic water oxidation: Influence on activation barrier of the O2-formation step. Biochim. Biophys. Acta 1860, 533-540, doi: 10.1016/j.bbabio.2019.04.005.

  • Bondar, A.-N. and Lemieux, J. (2019). Reactions at membrane interfaces. Chemical Reviews. 119, 6162-6183, doi: doi.org/10.1021/acs.chemrev.8b00596.

  • Buhrke, D., Gourinchas, G., Müller, M., Michael, N., Hildebrandt, P., Winkler, A. (2019). Distinct chromophore-protein environments enable asymmetric activation of a bacteriophytochrome activated diguanylate cyclase. J. Biol. Chem. doi: 10.1074/jbc.RA119.011915.

  • Buhrke, D., Hildebrandt, P. (2019). Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem. Rev., doi: 10.1021/acs.chemrev.9b00429.

  • Buhrke, D., Tavraz, N. N., Shcherbakova, D. M., Sauthof, L., Moldenhauer, M., Vélazquez Escobar, F., Verkhusha, V. V., Hildebrandt, P., Friedrich, T. (2019). Chromophore binding to two cysteines increases quantum yield of near-infrared fluorescent proteins. Sci Rep. 2019 Feb 12;9(1):1866. doi: 10.1038/s41598-018-38433-2.

  • Chatterjee, R., Lasalle, L., Gul, S., Fuller, F.D., Young, I.D., Ibrahim, M., de Lichtenberg, C., Cheah, M.H., Zouni, A., Messinger, J., Yachandra, V.K., Kern, J., and Yano, J. (2019). Structural isomers of the S2 state in photosystem II: do they exist at room temperature and are they important for function? Physiol Plant. 166(1):60-72, doi: doi.org/10.1111/ppl.12947.
  • Dau, H., Nürnberg, D. J., and Burnap, R. L. (2019). Local cycle of photosynthesis and quasi-aerobic respiration facilitated by manganese oxides – a hypothesis on the evolution of phototrophy. In: Bioenergetics: Oxygen Production and Reduction, eds. J. Barber, P. Nixon and A. V. Ruban, (World Scientific Publishers, Singapore), pg. 367-391, doi: 10.1142/9789813276925_0018.
  • Ehrenberg, D., Krause, N., Saita, M., Bamann, C., Kar, R.K., Hoffmann, K., Heinrich, D., Schapiro, I., Heberle, J., and Schlesinger, R. (2019) Atomistic insight into the role of threonine 127 in the functional mechanism of channelrhodopsin-2. Appl. Sci., 9 (22), 4905; https://doi.org/10.3390/app9224905.

  • Ehrenberg, D., Varma, N., Deupi, X., Koyanagi, M., Terakita, A., Schertler, GFX., Heberle, J., and Lesca, E. (2019).The two-photon reversible reaction of the bistable jumping spider rhodopsin-1. Biophysical Journal 116, 1248-1258, doi: https://doi.org/10.1016/j.bpj.2019.02.025.

  • Fernandez Lopez, M., Nguyen A. D., Velazquez Escobar, F., González, R., Michael, N., Nogacz, Ż., Piwowarski, P., Bartl, F., Siebert, F., Heise, I., Scheerer, P., Gärtner, W., Mroginski, M. A., Hildebrandt, P. (2019). Role of the Propionic Side Chains for the Photoconversion of Bacterial Phytochromes. Biochemistry, 2019 Aug 20;58(33):3504-3519. doi: 10.1021/acs.biochem.9b00526

  • Fudim, R., Szczepek, M., Vierock, J., Vogt, A., Schmidt, A., Kleinau, G., Fischer, P., Bartl, F., Scheerer, P., Hegemann, P. (2019). Design of a light-gated proton channel based on the crystal structure of Coccomyxa rhodopsin. Sci Signal. 2019 Mar 19;12(573). pii: eaav4203. doi: 10.1126/scisignal.aav4203

  • Han, R., Rempfer, K., Zhang, M., Dobbek, H., Zouni, A., Dau, H., Luber, S. (2019). Investigating the Structure and Dynamics of Apo‑Photosystem II. ChemCatChem 11, 4072–4080.doi: 10.1002/cctc.201900351.

  • Karathanou, K. and Bondar, A.-N. (2019). Using graphs of dynamic hydrogen bonds to dissect conformational coupling in a protein motor. Journal of Chemical Information and Modeling 59(5), 1882-1896, doi: 10.1021/acs.jcim.8b00979.

  • Kemmler, L., Ibrahim, M., Dobbek, H., Zouni, A., and Bondar, A.-N. (2019). Dynamic water bridging and proton transfer at a surface carboxylate cluster of photosystem II. Physical Chemistry Chemical Physics 21(45), 25449-25466, doi: 10.1039/C9CP03926k.
  • Kern, J., Müh, F., Zouni, A. (2019). Structural studies on tetrapyrrole containing proteins enabled by femtosecond X-ray pulses. In: Grimm B, Ed (2019). Metabolsm, structure and function of plant tetrapyrroles: Control mechanisms of chlorophyll biosynthesis and analysis of chlorophyll-binding proteins. Advances in Botanical Research, vol 91. pp. 33-67.
  • Krause, B. S., Kaufmann, J. C. D., Kuhne,, J., Vierock, J. T. T., Huber, T., Sakmar, T. P., Gerwert, K., Bartl,, F. J., and Hegemann, P. (2019). Tracking pore hydration in channelrhodopsin by site-directed infrared-active azido probes. Biochemistry. Feb 19. doi: 10.1021/acs.biochem.8b01211.

  • Kuhne, J., Vierock, J., Tennigkeit, S., Wietek, J.,  Petersen, D., Dreier, M.-A., Schartner, J., Gavrilijuk, K., Samir, F., El-Mashtoly, S. F., Hegemann, P., and Gerwert, K. (2019). Unifying photocycle model for light adaptation and temporal evolution of cation conductance in Channelrhodopsin-2. Proc Natl Acad Sci USA. 116(19):9380-9389. doi: 10.1073/pnas.1818707116.
  • Loche, P., Ayaz, C.,Schlaich, A., Uematsu, Y., and Netz, R. (2019). Giant Axial Dielectric Response in Water-Filled Nanotubes and Effective Electrostatic Ion−Ion Interactions from a Tensorial Dielectric Model. J. Phys. Chem. B 123,50, 10850-10857, doi: 10.1021/acs.jpcb.9b09269.
  • Loche, P., Wolde-Kidan, A., Schlaich, A., Bonthuis, D. J., and Netz, R. (2019). Comment on “Hydrophobic Surface Enhances Electrostatic Interaction in Water” Phys. Rev. Lett. 123, 049601, doi: 10.1103/PhysRevLett.123.049601
  • Luck, M., Velázquez Escobar, F., Glass, K., Sabotke, M. I., Hagedorn, R., Corellou, F., Siebert, F., Hildebrandt, P., and Hegemann, P. (2019). Photoreactions of the histidine kinase rhodopsin Ot-HKR from the marine picoalga Ostreococcus tauri. Biochemistry. Feb 15. doi: 10.1021/acs.biochem.8b01200.

  • Mukherjee, S., Hegemann, P., Broser, M. (2019). Enzymerhodopsins: novel photoregulated catalysts for optogenetics. Curr Opin Struct Biol. 57:118-126. doi: 10.1016/j.sbi.2019.02.003.
  • Nass Kovacs, G., Colletier, J.-P., Grünbein, M. L., Yang, Y., Stensitzki, T., Batyuk, A., Carbajo, S., Doak, R. B., Ehrenberg, D., Foucar, L., Gasper, R., Gorel, A., Hilpert, M., Kloos, M., Koglin, J. E., Reinstein, J., Roome, C. M., Schlesinger, R., Seaberg, M., Shoeman, R. L., Stricker, M., Boutet, S., Haacke, S., Heberle, J., Heyne, K., Domratcheva, T., Barends, T. R. M., and Schlichting, I.(2019). Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin. Nature Communications 10, Article Number 3177. doi: 10.1038/s41467-019-10758-0

  • Oppermann, J., Fischer, P., Silapetere, A., Liepe, B., Rodriguez-Rozada, S., Flores-Uribe, J., Peter, E., Keidel, A., Vierock, J., Kaufmann, J., Broser, M., Luck, M., Bartl, F., Hildebrandt, P., Wiegert, J. S., Béjà, O., Hegemann, P., Wietek, J. (2019). MerMAIDs: a family of metagenomically discovered marine anion-conducting and intensely desensitizing channelrhodopsins. Nat Commun. 2019 Jul 25;10(1):3315. doi: 10.1038/s41467-019-11322-6.

  • Riedel, M., Wersig, J., Ruff, A., Schuhmann, W., Zouni, A., and Lisdat, F. (2019). A Z‐scheme‐inspired photobioelectrochemical H2O/O2 cell with a 1 V open‐circuit voltage combining photosystem II and PbS quantum dots. Angew Chem - Int Ed 58, 801-805.

  • Senger, M., Eichmann, V., Laun, K., Duan, J., Wittkamp, F., Knör, G., Apfel, U.-P., Happe, T., Winkler, M., Heberle, J., Stripp, S. T. (2019). How [FeFe]-Hydrogenase Facilitates Bidirectional Proton Transfer. J. Am. Chem. Soc. 141 (43), 17394-17403; doi.org/10.1021/jacs.9b09225.

  • Sidabras, J. W., Duan, J. Winkler, M., Happe, T., Hussein, R., Zouni, A., Suter, D., Schnegg, A., Lubitz, W., Reijerse, E. J. (2019). Extending electron paramagnetic resonance to nanoliter volume protein single crystals using a self-resonant microhelix. Sci. Adv 5, No 10, doi: 10.1126/sciadv.aay1394.

  • Siemers, M., Lazaratos, M., Karathanou, K., Brown, L.S., and Bondar, A.-N. (2019). Bridge: A graph-based algorithm to analyze dynamic H-bond networks in membrane proteins. Journal of Chemical Theory and Computation 15(12), 6781-6798, doi: 10.1021/acs.jctc.9b00697.
  • Vogt, A., Silapetere, A., Grimm, C., Heiser, F., Möller, M. A., and Hegemann, P. (2019). Engineered Passive Potassium Conductance in the KR2 Sodium Pump. Biophys. J. 116, 1941-1951. doi.org/10.1016/j.bpj.2019.04.001.
  • Weber A. M., Kaiser, J., Ziegler, T., Pilsl, S.,, Renzl, C., Sixt, L., Pietruschka, G., Moniot, S., Kakoti, A., Juraschitz, M., Schrottke, S.,Lledo Bryant, L., Steegborn, C., Bittl, R., Mayer, G., and Möglich, A. (2019). A blue light receptor that mediates RNA binding and translational regulation. Nature Chemical Biology, doi: 10.1038/s41589-019-0346-y.
  • Wolf, A., Wonneberg, J., Balke, J., Alexiev, U. (2019). Electronation-dependent structural change at the proton exit side of cytochrome c oxidase as revealed by site-directed fluorescence labeling. FEBS Journal, doi: 10.1111/febs.15084.
  • Zaharieva, I., and Dau, H. (2019). Energetics and kinetics of S-state transitions monitored by delayed chlorophyll fluorescence. Frontiers in Plant Science Vol. 10, Article 386, doi: 10.3389/fpls.2019.00386.