Publications

Cover page of J. Phys. Chem. B (Jan. 2017) featuring the article by Kottke, Lórenz-Fonfría, and Heberle
Cover page of J. Phys. Chem. B (Jan. 2017) featuring the article by Kottke, Lórenz-Fonfría, and Heberle

2017

  • Adam S., Knapp-Mohammady M., Yi J., and Bondar A-N. (2017). Revised CHARMM force-field parameters for iron-containing cofactors of photosystem II. J Comput Chem DOI:10.1002/jcc.24918.

  • Bondar A.-N. and Smith J.C. (2017). Protonation-state coupled conformational dynamics in reaction mechanisms of channel and pump rhodopsins. Photochem Photobiol DOI:10.1111/php.12790.

  • del Val, C. and Bondar, A.-N. (2017). Charged groups at binding interfaces of the PsbO subunit of photosystem II: a combined bioinformatics and simulation study. Biochim Biophys Acta (BBA) - Bioenergetics 1858, 432-441.

  • Grimm, C., Vierock, J., Hegemann, P., and Wietek, J. (2017). Whole-cell Patch-clamp Recordings for Electrophysiological Determination of Ion Selectivity in Channelrhodopsins. JoVE 55497.

  • Harris N.J., Reading E., Ataka K., Grzegorzewski L., Charalambous K., Liu X., Schlesinger R., Heberle J., and Booth P.J. (2017). Structure formation during translocon-unassisted co-translational membrane protein folding. Sci Rep 7: 8021.

  • Kacprzak, S., Njimona, I., Renz, A., Feng, J., Reijerse, E., Lubitz, W., Krauss, N., Scheerer, P., Nagano, S., Lamparter, T., and Weber, S. (2017). Inter-subunit distances in full-length, dimeric, bacterial phytochrome Agp1, as measured by PELDOR between different spin label positions, remain unchanged upon photoconversion. J Biol Chem 292, 7598-7606.

  • Kielb, P., Utesch, T., Kozuch, J., Jeoung, J.-H., Dobbek, H., Mroginski, M.A., Hildebrandt, P., and Weidinger, I. (2017). Switchable Redox Chemistry of the Hexameric Tyrosine-Coordinated Heme Protein. J Phys Chem B 121, 3955-3964.

  • Kottke, T., Lórenz-Fonfría V.A., and Heberle J. (2017). The Grateful Infrared – Sequential Protein Structural Changes Resolved by IR Difference Spectroscopy. J Phys Chem B 121, 335-350.

  • Krause, B.S., Grimm, C., Kaufmann, J.C.D., Schneider, F., Sakmar, T.P., Bartl, F.J., and Hegemann, P. (2017). Complex Photochemistry within the Green-Absorbing Channelrhodopsin ReaChR. Biophys J 112, 1166-1175.

  • Lamparter, T., Krauß, N., and Scheerer, P. (2017). Phytochromes from Agrobacterium fabrum. Photochem Photobiol 93, 642-655.

  • Nango A., Royant A., Kubo M., Nakane T., Wickstrand C., Kimura T., Tanaka T., Tono K., Song C., Tanaka R., Arima T., Yamashita A., Kobayashi J., Hosaka T., Mizohata E., Nogly P., Sugahara M., Nam D., Nomura T., Shimamura T., Im D., Fujiwara T., Yamanaka Y., Jeon B., Nishizawa T., Oda K., Fukuda M., Andersson R., Båth P., Dods R., Davidsson J., Matsuoka S., Kawatake S., Murata M., Nureki O., Owada S., Kameshima T., Hatsui T., Joti Y., Schertler G., Yabashi M., Bondar A.-N., Standfuss J., Neutze R., and Iwata S. (2016). A three-dimensional movie of structural changes in bacteriorhodopsin. Science 354, 1552-1557.

  • Oberthuer, D., Knoška, J., Wiedorn, M.O., Beyerlein, K.R., Bushnell, D.A-, Kovaleva, E.G., Heymann, M., Gumprecht, L., Kirian, R.A., Barty, A., Mariani, V., Tolstikova, A., Adriano, L., Awel, S., Barthelmess, M., Dörner, K., Xavier, P.L., Yefanov, O., James, D.R., Nelson, G., Wang, D., Calvey, G., Chen, Y., Schmidt, A., Szczepek, M., Frielingsdorf, S., Lenz, O., Snell, E., Robinson, P.J., Šarler, B., Belšak, G., Maček, M., Wilde, F., Aquila, A., Boutet, S., Liang, M., Hunter, M.S., Scheerer, P., Lipscomb, J.D., Weierstall, U., Kornberg, R.D., Spence, J.C., Pollack, L., Chapman, H.N., and Bajt, S. (2017). Double-flow focused liquid injector for efficient serial femtosecond crystallography. Sci Rep 7, 44628.

  • Sezer, M., Woelke, A.-L., Knapp, E.W., Schlesinger, R., Mroginski, M.A., and Weidinger, I.M. (2017). Redox induced protonation of heme propionates in cytochrome c oxidase: Insights from surface enhanced resonance Raman spectroscopy and QM/MM calculations. Biochim Biophys Acta (BBA) - Bioenergetics 1858, 103-108.

  • Takiden, A., Velazquez-Escobar, F., Dragelj, J., Woelke, A.L., Knapp E.-W., Piwowarski, P., Bartl, F., Hildebrandt, P., and Mroginski, M.A. (2017). Structural and Vibrational Characterization of the Chromophore Binding Site of Bacterial Phytochrome Agp1. Photochem Photobiol 93, 713-723.

  • Velázquez Escobar, F., Buhrke, D., Fernandez Lopez, M., Shenkutie, S.M., von Horsten., S, Essen, L.O., Hughes, J., and Hildebrandt, P. (2017). Structural communication between the chromophore-binding pocket and the N-terminal extension in plant phytochrome phyB. FEBS Lett 591, 1258-1265.

  • Velázquez Escobar, F., Buhrke, D., Michael, N., Sauthof, L., Wilkening, S., Tavraz, N.N., Salewski, J., Frankenberg-Dinkel, N., Mroginski, M.A., Scheerer, P., Friedrich, T., Siebert, F., and Hildebrandt, P. (2017). Common Structural Elements in the Chromophore Binding Pocket of the Pfr State of Bathy Phytochromes. Photochem Photobiol 93, 724-732.

  • Velazquez Escobar, F., Lang, C., Takiden, A., Schneider, C., Balke, J., Hughes, J., Alexiev, U., Hildebrandt, P., and Mroginski, M.A. (2017). Protonation-Dependent Structural Heterogeneity in the Chromophore Binding Site of Cyanobacterial Phytochrome Cph1. J Phys Chem B 121, 47-57.