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Publications

2020

  • Battocchio, G., González, R., Rao, A., Schapiro, I and Mroginski, M.A. (2020) Dynamic Properties of the Photosensory Domain of Deinococcus Radiodurans Bacteriophytochrome. J. Phys. Chem. B 124, 1740-1750; doi: 10.1021/acs.jpcb.0c00612
  • Buhrke. D., Battocchio, G., Wilkening, S., Blain-Hartung, M., Baumann, T., Schmitt, F. J., Friedrich, F., Mroginski, M. A., Hildebrandt, P.(2020) Red, orange, green: Light- and Temperature-dependent Color Tuning in a Cyanobacteriochrome. Biochemistry 59, 4, 509-519, doi: 10.1021/acs.biochem.9b00931.

  • Buhrke, D., Gourinchas, G., Müller, M., Michael, N., Hildebrandt, P., Winkler, A. (2020). Distinct chromophore-protein environments enable asymmetric activation of a bacteriophytochrome activated diguanylate cyclase. J Biol Chem 295, 539-551. doi: 10.1074/jbc.RA119.011915.

  • Buhrke, D., Hildebrandt, P. (2020). Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem Rev 120, 3577-3630. doi: 10.1021/acs.chemrev.9b00429.

  • Friedrich, D., Brünig, F.N., Nieuwkoop, A.J., Netz, R., Hegemann, P. and Oschkinat, H. (2020). Collective exchange processes reveal an active site proton cage in bacteriorhodopsin. Commun Biol 3:4 doi: 10.1038/s42003-019-0733-7.

  • Friedrich, D., Perodeau, J., Nieuwkoop, A.J., and Oschkinat, H. (2020). MAS NMR detection of hydrogen bonds for protein secondary structure characterization. J Biomol NMR 74, 247-256. doi: 10.1007/s10858-020-00307-z

  • Gerland, L.M., Friedrich, D., Hopf, L., Donovan, E., Wallmann, A., Erdmann, N., Diehl, A., Bommer, M., Buzar, K., Ibrahim, M., Schmieder, P., Dobbek, H., Zouni, A., Bondar, A.-N., Dau, H., and Oschkinat, H. (2020). pH‐Dependent Protonation of Surface Carboxylates in PsbO Enables Local Buffering and Triggers Structural Changes. ChemBioChem 21, 1597-1604. doi: 10.1002/cbic.201900739.

  • Harris, A., Lazaratos, M., Siemers, M., Watt, E., Hoang, A., Tomida, S., Schubert, L., Saita, M., Heberle, J., Furutani, Y., Kandori, H., Bondar, A. N., and Brown, L. S. (2020). Mechanism of Inward Proton Transport in an Antarctic Microbial Rhodopsin. J Phys Chem B 124, 4851-4872. doi: 10.1021/acs.jpcb.0c02767

  • Ibrahim, M., Fransson, T., Chatterjee, R., Cheah, M. H., Hussein, R., Lassalle, L., Sutherlin, K. D., Young, I. D., Fuller, F. D., Gul, S., Kim, I.-S., Simon, P. S., de Lichtenberg, C., Chernev, P., Bogacz, I., Pham, C. C., Orville, A. M., Saichek, N., Northen, T., Batyuk, A., Carbajo, S., Alonso-Mori, R., Tono, K., Owada, S., Bhowmick, A., Bolotovsky, R., Mendez, D., Moriarty, N. W., Holton, J. M., Dobbek, H., Brewster, A. S., Adams, P. D., Sauter, N. K., Bergmann, U., Zouni, A., Messinger, J., Kern, J., Yachandra, V. K., and Yano, J. (2020). Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism. PNAS 117, 12624-12635. doi: 10.1073/pnas.2000529117

  • Kaufmann, J.C.D., Krause B.S., Adam S., Ritter E., Schapiro I., Hegemann P. and Bartl F.J. (2020). Modulation of Light Energy Transfer from Chromophore to Protein in the Channelrhodopsin ReaChR. Biophys J 119, 705-716; doi: 10.1016/j.bpj.2020.06.031

  • Kraskow, A., Nguyen, D. A., Buhrke, D., Velasquez Escobar, F., Fernandez Lopez, M., Michael, N., Sauthof, L., Schmidt, A., Piwowarski, P., Yang, Y., Stensitzki, T., Adam, S., Bartl, F., Schapiro, I., Heyne, K., Siebert, F., Scheerer, P., Mroginski, M. A., Hildebrandt, P. (2020) Intramolecular Proton Transfer Controls Protein Structural Changes in Phytochrome. Biochemistry 59, 1023-1037. doi: 10.1021/acs.biochem.0c00053.

  • Kruse, F., Nguyen, A.D., Dragelj, J., Schlesinger, R., Heberle, J., Mroginski, M.A. and Weidinger, I.M. (2020). Characterisation of the Cyanate Inhibited State of Cytochrome c Oxidase. Sci Rep 10, 3863. doi.org/10.1038/s41598-020-60801-0

  • Müh, F., and Zouni, A. (2020). Structural basis of the light-harvesting in the photosystem II core complex. Protein Sci. 29(5):1090-1119; doi: 10.1002/pro.3841.

  • Nagano, S., Guan, K., Shenkutie, S., Feiler, C., Weiss, M. S., Kraskov, A., Buhrke, D., Hildebrandt, P., Hughes, J. (2020). Structural insights into photoactivation and signalling in plant phytochromes. Nat Plants 6, 581-588. doi: 10.1038/s41477-020-0638-y

  • Reidelbach, M. and Imhof, P. (2020) Proton transfer in the D-channel of cytochrome c oxidase modelled by a transition network approach. Biochim. Biophys. Acta; doi: 10.1016/j.bbagen.2020.129614; doi: 10.1016/j.bbagen.2020.129614

  • Sadeghi, M., Balke, J., Schneider, C., Nagano, S., Stellmacher, J., Lochnit, G., Lang, C., Weise, C., Hughes, J., and Alexiev, U. (2020). Transient deprotonation of the chromophore affects protein dynamics proximal and distal to the linear tetrapyrrole chromophore in phytochrome Cph1. Biochemistry 59,1051-1062. doi: 10.1021/acs.biochem.9b00967.

  • Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R. K., Johnson, P. J. M., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Arrell, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Brünle, S., Deupi, X., Schertler, G. F. X., Benoit, R. M., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., and Standfuss, J. (2020). Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature 583, 314-318. doi: 10.1038/s41586-020-2307-8

  • Stensitzki, T., Adam, S., Schlesinger, R., Schapiro, I., and Heyne, K. (2020). Ultrafast Backbone Protonation in Channelrhodopsin-1 Captured by Polarization Resolved Fs Vis-pump-IR-Probe Spectroscopy and Computational Methods. Molecules 25, 848; doi: 10.3390/molecules25040848

  • Velazquez Escobar, F., Kneip, C., Michael, N., Hildebrandt, T., Tavraz, N., Gärtner, W., Hughes, J., Friedrich, T., Scheerer, P., Mroginski, M.A., and Hildebrandt, P. (2020). The Lumi-R Intermediates of Prototypical Phytochromes. J Phys Chem B 124, 4044-4055.  doi: 10.1021/acs.jpcb.0c01059.

  • Wolf, A., Dragelj, J., Wonneberg, J., Stellmacher, J., Balke, J., Woelke, A.L., Hodoscek, M., Knapp, E.W., and Alexiev, U. (2020). The redox-coupled proton-channel opening in cytochrome c oxidase. Chem. Science 11, 3804-3811; doi: 10.1039/C9SC06463J

  • Xu, X., Port, A., Wiebeler, Ch., Kai-Hong Zhao, K.-H., Schapiro, I., and Gärtner, W. (2020). Structural elements regulating the photochromicity in a cyanobacteriochrome. PNAS117 (5)2432-2440, doi: 1,